Major expansion in the human niche preceded out of Africa dispersal

Our article on how a huge expansion of the human niche in Africa around 70,000 years ago likely equipped later out-of-Africa dispersals with unique ecological flexibility is now published in Nature.

Emily Y. Hallett, Michela Leonardi, Jacopo Niccolò Cerasoni, Manuel Will, Robert Beyer, Mario Krapp, Andrew W. Kandel, Andrea Manica & Eleanor M. L. Scerri
Major expansion in the human niche preceded out of Africa dispersal
Nature

Homo sapiens evolved in Africa starting around 300,000 or 250,000 years ago. Despite having attempted dispersals out of Africa several times during this period, all non-Africans today descend from a single dispersal that happened around 50,000 years ago.

In this article, we reconstruct human ecological dynamics in Africa between 120,000 and 15,000 years ago, using the method we developed for our study on ungulates. We found that humans began to occupy new environments around 70,000 years ago. Because this occurred in quite different habitats at the same time, it is unlikely to be due to a single technological innovation (e.g., for storing and transporting water).

The most likely explanation is that during this period, positive feedback occurred between larger geographical ranges, increased contacts between populations (as also suggested by morphological data), facilitated cultural exchanges, and a higher likelihood of developing and maintaining innovations.

This increased ecological flexibility would have later helped humans successfully disperse out of Africa.

Article

Emily Y. Hallett, Michela Leonardi, Jacopo Niccolò Cerasoni, Manuel Will, Robert Beyer, Mario Krapp, Andrew W. Kandel, Andrea Manica & Eleanor M. L. Scerri
Major expansion in the human niche preceded out of Africa dispersal
Nature

Abstract

All contemporary Eurasians trace most of their ancestry to a small population that dispersed out of Africa about 50,000 years ago (ka)1,2,3,4,5,6,7,8,9. By contrast, fossil evidence attests to earlier migrations out of Africa10,11,12,13,14,15. These lines of evidence can only be reconciled if early dispersals made little to no genetic contribution to the later, major wave. A key question therefore concerns what factors facilitated the successful later dispersal that led to long-term settlement beyond Africa. Here we show that a notable expansion in human niche breadth within Africa precedes this later dispersal. We assembled a pan-African database of chronometrically dated archaeological sites and used species distribution models (SDMs) to quantify changes in the bioclimatic niche over the past 120,000 years. We found that the human niche began to expand substantially from 70 ka and that this expansion was driven by humans increasing their use of diverse habitat types, from forests to arid deserts. Thus, humans dispersing out of Africa after 50 ka were equipped with a distinctive ecological flexibility among hominins as they encountered climatically challenging habitats, providing a key mechanism for their adaptive success.

Media coverage

New York Times: “When Humans Learned to Live Everywhere” by Carl Zimmer
The Independent: “Early humans adapted to extreme habitats. Researchers say it set the stage for global migration
New Scientist: “70,000 years ago humans underwent a major shift – that’s why we exist” by Michael Marshall
Nature News and Views: “Homo sapiens adapted to diverse habitats before successfully populating Eurasia” by William Banks
Natural History Museum: “Sharing ideas might have helped Homo sapiens adapt for life outside Africa” by James Ashworth
University of Cambridge: “Learning to thrive in diverse African habitats allowed early humans to spread across the world
IFLScience: “Why Homo Sapiens Failed To Migrate Out Of Africa Until 60,000 Years Ago
Naked Scientist: “Humanity’s road to dominance began earlier than expected

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Talk for the Computational and Digital Archaeology seminar series, Cambridge

If you are free today at 4 pm (UK time), join us for the first Computational and Digital Archaeology seminar of the term at the Department of Archaeology, Cambridge.

Palaeoecology made easy: two new tools to make the best use of big data in archaeology

Monday, 9 October, 2023 – 16:00 to 17:00 (UK time)

I will be talking about palaeoecology, #paleoclimate, and big data in archaeology. I will also present two new tools that I co-developed to make palaeoecological analyses easier: pastclim and tidysdm.

Abstract: In recent years, we witnessed the publication of both large datasets of archaeological occurrences and palaeoclimatic data series covering hundreds of thousands of years. This opened the door to new, exciting possibilities in the field of palaeoecology. 

To make the best use of such data, I co-developed two new R packages that facilitate their use and allow simpler pipelines for their analyses.

The first package is pastclim. It is designed to easily access and manipulate climatic data and palaeoclimatic/future climate reconstructions. It contains a set of functions to recover the climate for time periods of interest, crop to specific areas, extract data from locations scattered in space and/or time, retrieve time series from individual sites, and manage the ice or land coverage.

The second package is tidysdm. The rationale behind it is to take advantage of the tidymodels framework in R to perform species distribution modelling (also known as habitat suitability/ecological niche modelling). This is the first software specifically designed to work with occurrences scattered in time, a task that with other tools, is either impossible or requires extensive tweaking. The integration with pastclim allows hassle-free access and handling of climatic data from the past, the present, and the future.

I will also present some applications of such tools, as an example of the new opportunities they could offer to scholars studying the past (e.g. archaeologists, archaeozoologists, palaeoecologists, palaeoanthropologists).

Event location: McDonald Institute for Archaeological Research Seminar Room
Join online: https://zoom.us/j/94826858436?pwd=N1JCeU9Id3dUdkJ4ZDVyUjhtQ0FMQT09

Event series: Computational and Digital Archaeology Laboratory Series

Update: a couple of pictures of my talk

The palaeoecology of European ungulates at INQUA 2023 in Rome

In these days, there is the Congress of the International Union for Quaternary Research (INQUA 2023) in Rome.

Yesterday morning I gave a presentation about “Time matters: testing for ecological niche changes in Late Quaternary European ungulates“. It was based on our work on the ungulates (scientific paper, blog post), but I have also presented a sneak peek of a resource that will be out very soon, so… watch this space!

Here are a few pictures of my presentation, and a happy INQUA mammoth picture taken after the end of it!

Webinar about pastclim, an R package to work with palaeoclimate

A couple of days ago, my PI, Prof. Andrea Manica (University of Cambridge), presented a webinar. He talked about pastclim, our piece of software to easily access and manage palaeoclimatic data. He gave a general overview about the palaeoclimatic reconstructions included in it, presented the package and gave examples of how palaeoclimate can be used to address questions related to evolution, palaeoecology and migrations.

Here is the video of the event. You will see some of my work presented there (especially my paper on the palaeoecology of European ungulates).

Mapping Ancient Africa: Andrea Manica “pastclim 1.2: an R package for paleoclimatic reconstructions”

The seminar was part of the project “Mapping Ancient Africa: Climate, Vegetation & Humans“, a multi-year project funded by the Palaeoclimate commission (PALCOM) and Humans & Biosphere commission (HABCOM) within the International Union for Quaternary Research (INQUA).